Bioconductor Transcriptional Amplification

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edgeR DESeq2 Transcriptional Amplification

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by Dario Strbenac ★ 1.6k

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Comment: gene Set with high AUC score but no cells assigned to cell type by eja.hdrer33ge.r.m • 0

Understanding complex data results like those from AUCell can be challenging. For easier analysis and better data management on the go you …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Answer: DESeq2 design for haplotype MPRA by Michael Love 43k

> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…

Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k

It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…

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Answer: DESeq2 design for haplotype MPRA

Comment: Check removeBatchEffect effectiveness

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